Synaptome Explorer is used for in-depth exploration of the synaptome of a single brain section. It enables interactive visualization of the brain region in full resolution, as captured by the microscope, and uses overlays to display the synaptic puncta and all their parameters, providing users with extensive parameter range filters to display subsets of puncta accordingly. The granularity of the data visualization is at the level of individual puncta, as users can click on a single punctum and see its parameters. An additional feature is region-based and tile-based filtered puncta statistics, where users can set up parameter range filters, select a combination of regions or subregions and interactively calculate statistics, such as mean intensity, mean size and density, visualized over the corresponding regions or tiles, respectively.
Click on the video below to view the instructional video describing the Synaptome Explorer. The video showcases the features implemented in the application.